PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01020666001
Common NameVIT_12s0028g02520
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TCP
Protein Properties Length: 308aa    MW: 33699.8 Da    PI: 6.9128
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01020666001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.82.3e-3521109285
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssase 72 
                        +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+++                            
  GSVIVT01020666001  21 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELppwhpialdpnasagtsdigmA------ 106
                        79**************************************************************7777776553322211111110...... PP

                TCP  73 ceaesssssasns 85 
                                  ++s
  GSVIVT01020666001 107 ----------QQS 109
                        ..........111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-312186IPR005333Transcription factor, TCP
PROSITE profilePS5136932.7542381IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MKSAGGGEIV QVQGGHIVRS TGRKDRHSKV YTAKGPRDRR VRLSAHTAIQ FYDVQDRLGY  60
DRPSKAVDWL IKKAKSSIDK LAELPPWHPI ALDPNASAGT SDIGMAQQSQ ESNYVFPPLG  120
GGGGVGGENP SNDSAFIAPP LDSDSIADTM KSFFPTSSGT SSINYQNYPP DSNHHNEDLC  180
LSLHSFQDPD AESNHKNLFA SAAQVGYETN FQRMVSWGGG GGDSESRVLL LLFVLGMSFL  240
LLLGQCINLH SLMAGLCQME SQVFEFQHEF RVRRSIAWSQ IGHPLPPPTL ITEYTFSSNR  300
IFSRLSW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.95040.0fruit| inflorescence| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4780290.0AM478029.1 Vitis vinifera contig VV78X148456.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010657020.11e-166PREDICTED: transcription factor TCP4
RefseqXP_010657021.11e-166PREDICTED: transcription factor TCP4
RefseqXP_010657022.11e-166PREDICTED: transcription factor TCP4
RefseqXP_010657023.11e-166PREDICTED: transcription factor TCP4
RefseqXP_010657024.11e-166PREDICTED: transcription factor TCP4
SwissprotQ8LPR54e-63TCP4_ARATH; Transcription factor TCP4
TrEMBLE0CTN30.0E0CTN3_VITVI; Putative uncharacterized protein
STRINGVIT_12s0028g02520.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-61TCP family protein